Romanian research groups service
Services List
Services | Institute | Summary | Scientific domains | Type of services | Peer review status |
---|---|---|---|---|---|
Just DNA-Seq | Institute of Biochemistry of the Romanian Academy | The Just DNA-Seq platform includes multiple modules and bioinformatics pipelines to analyze and annotate human genome data. Just DNA-Seq tools provide reports to retrieve polygenic risk scores (PRS), information about variants associated with age-related diseases or major life threatening risks and longevity-associated variants present in your genome. |
Aging research | Tools | No |
SynergyAge | Institute of Biochemistry of the Romanian Academy | The SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way. |
Aging research | Database | No |
MetaboAge | Institute of Biochemistry of the Romanian Academy | MetaboAge is a free, open-source, manually curated human aging-related metabolome database. It provides intuitive bioinformatics tools for the visualization, interpretation, and analysis of pathway knowledge with regards to metabolites that change during the aging process. |
Aging research | Database | No |
MitoAge | Institute of Biochemistry of the Romanian Academy | MitoAge is a curated, publicly available database, containing an extensive collection of mtDNA features and longevity records. It contains calculated mtDNA compositional features of the entire mitochondrial genome, mtDNA coding (tRNA, rRNA, protein-coding genes), and non-coding (D-loop, insertions) regions, codon usage for each protein-coding gene, and longevity records for over 900 species, as well as tools for the comparative analysis of mtDNA, particularly focusing on animal longevity. |
Aging research | Database | No |
Longevity genie | Institute of Biochemistry of the Romanian Academy | Longevity genie is an open-source toolbox and chatbot designed to use large language models in answering questions about personal health, genetics, and groundbreaking longevity research. |
Aging research | Tools | No |
molecularmodels.ro | Bioactive Research Group | Colection of 3D printable models of various protein and complexes with relevance for teaching biomolecular structure. Instructions on how to convert a pdb file to a printable stl file, as well as how to print molecular models are provided also. Details available in: Mihasan, M. A Beginner’s Guideline for Low-cost 3D Printing of Macromolecules Usable for Teaching and Demonstration. Biochem. Mol. Biol. Educ. 2021, bmb.21493. |
Bio-Molecular Sciences, Structural Biology, Teaching | Data and instructions | No |
Robosample - Molecular Simulation Program based on high-speed robot mechanics | Institute of Biochemistry of the Romanian Academy and Illinois Institute of Technology Chicago | Reliable and user-friendly simulation package for fast biomolecular sampling that does not require extensive expertise in mechanical engineering or in the statistical mechanics of reduced coordinates. |
Biomolecular sampling | Tools | No |
Plastic Raman Database – A Raman spectral database of aged plastics | Faculty of Physics, "Babeș-Bolyai" University of Cluj-Napoca | Plastic Raman database comprises Raman spectra of naturally aged plastics, both macro- and microplastics, including standard plastics. It comprises plastics aged for years both in terrestrial or aquatic conditions and characteristic spectral information, images of samples and relevant description of various plastic waste samples collected from natural environment. It covers 6 recyclable types of plastic: polyethylene terephthalate (PET), high-density polyethylene (HDPE), polyvinyl chloride (PVC), low-density polyethylene (LDPE), polypropylene (PP), and polystyrene (PS). |
Computational chemistry, Structure | Data | No |
Registry of bioinformatics resources developed by Romanian research groups | CRB | Engagement | Documents | No | |
GitHub - TracyRage/muddy_mine | Faculty of Biology and Geology, "Babeș-Bolyai" University of Cluj-Napoca | A mining pipeline - muddy_mine, which could engage NLP technology in the niche environmental topics such as mud volcanoes. This pipeline is able to mine taxonomy (bacterial, archaeal), methods or any other tokens of interest from the Open Access articles. Articles available in the S2ORC database, CC BY-NC 2.0, unmodified (Lo et al. 2020). muddy_mine output represents a csv table with all the relevant data regarding mud volcanoes. |
Geology | Data | No |